中國科學院深海科學與工程研究所“海洋微生物分子生態學研究組”受“知識創新工程前沿領域”等項目資助，于2013年3月成立，主要開展深海深淵微生物的分子生態學研究。
研究方向
深海深淵微生物生理生態
微生物是海洋生態系統的重要組成部分。在深海深淵等生境中開展相關研究有助于探討微生物在極端環境下的組成、分布及生命活動規律，為生物進化研究提供理論基礎。
深海深淵生物地球化學
深海深淵存在著活躍的生物地球化學過程，其中許多關鍵過程均由微生物介導。此交叉學科研究有助于理解深海及深部生物圈中微生物參與的元素循環過程和機制。
學科帶頭人
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荊紅梅，研究員，博士生導師（博士，香港大學，2006）
海洋微生物分子生態學研究組學科帶頭人
聯系電話：0898-88381165；
電子郵箱：hmjing@idsse.ac.cn
個人信息：http://ir.idsse.ac.cn/hmjing@idsse.ac.cn?
博士后、項目助理招聘中：
http://www.idsse.cas.cn/rcdw2015/rczp2015/201701/t20170117_4737674.html
???團隊成員
劉?皓，博士，副研究員，碩士生導師
電子郵箱：liuh@idsse.ac.cn
張 玥，博士，特別研究助理
電子郵箱：zhangyue@idsse.ac.cn
在讀研究生
王鐠蒂，2023級博士研究生
肖?瑤，2023級博士研究生
吳盛楠，2024級碩士研究生
劉莉莉，2024級碩士研究生
???已畢業研究生
張?玥，博士，2016級博士研究生
姜秋云，博士，2019級博士研究生
王芳洲，博士，2020級博士研究生
張?薇，碩士，2022級碩士研究生
周?鵬，碩士，2013級碩士研究生
許秋彤，碩士，2014級碩士研究生
朱文達，碩士，2015級碩士研究生
黃?寧，碩士，2017級碩士研究生
韋?譽，碩士，2017級碩士研究生
近五年發表文章
1.?Wang Puding, Peng Xiaotong, Jing Hongmei*. Diversity and ecological potentials of viruses inhabiting in the Kermadec and Diamantina trench sediments. ISME Communications, 2025, 5(1), ycaf147.
2.?Zhang Yue, Liu Hongbin, Jing Hongmei*. Community differences and potential function along the particle size spectrum of microbes in the twilight zone. Microbiome, 2025, 13(1), 121.
3.?Zhang Wei, Li Yingdong, Chu Yunmeng, Liu Hao, Jing Hongmei*, Xia Qianfenh. Deep-sea ecosystems as an unexpected source of antibiotic resistance genes. Marine Drugs, 2025, 23(1), 17.
4.?Li Yingdong, Liu Hao, Xiao Yao,?Jing Hongmei*. Metagenome sequencing and 982 microbial genomes from Kermadec and Diamantina Trenches sediments. Scientific Data, 2024, 11, 1067.
5.?Zhang Yue, Jing Hongmei*. Metagenome sequencing and 107 microbial genomes from seamount sediments along the Yap and Mariana trenches.?Scientific Data,?2024, 11, 887.
6.?Zhang Yue, Jing Hongmei*, Liu Hao. Geographical distribution and driving force of microbial communities in the sediments of Diamantina and Kermadec trenches. Frontiers in Microbiology, 2024, 1474645.
7. Hu Aoran, Zhao Weishu, Wang Jing, Qi Qi, Xiao, Xiang, Jing Hongmei*. Microbial communities reveal niche partitioning across the slope and bottom zones of the challenger deep. Environmental Microbiology Reports, 2024,16(4), e13314.
8. Li Yingdong, Wang Ting, Jing Hongmei*, Xiao Yao. Evolutionary ecology of denitrifying methanotrophic NC10 bacteria in the deep‐sea biosphere. Molecular Ecology, 2024, e17372.
9. Liu Hao, Jing Hongmei*. The vertical metabolic activity and community structure of prokaryotes along different water depths in the Kermadec and Diamantina trenches. Microorganisms, 2024, 12(4), 708.
10. Zhang Yue, Jing Hongmei*. Deterministic process controlling the prokaryotic community assembly across seamounts along in the Yap and Mariana trenches. Ecological Indicators, 2024, 111538.
11. Chen Hao*, Li Chaolun, Qiu Jian-Wen, Bettencourt Raul, Feng Dong, Wang Yong, Jing Hongmei*, et al. Editorial: Deep-sea chemosynthetic ecosystems: Living in extreme environments. Frontiers in Marine Science, 2023, 10, 1087465.
12. Jing Hongmei*. Microbial communities reveal niche pLiu Hao, Jing Hongmei*, Wang Fangzhou. Archaea predominate in the ammonia oxidation process in the sediments of the Yap and Mariana Trenches. Frontiers in Microbiology, 2023, 14, 1268790.?
13. Zhang Yue, Xia Xiaomin, Wan Linglin, Han Bo-Ping, Liu Hongbin, Jing Hongmei*. Microbial communities are shaped by different ecological processes in subtropical reservoirs of different trophic states. Microbial Ecology, 2023, 86(3), 2073-2085.
14. Zhang Yue, Liu Hongbin, Huang Ning, Peng Xiaotong*, Jing Hongmei*. Geographical distribution and driving force of micro-eukaryotes in the seamount sediments along the island arc of the Yap and Mariana trenches. Microbiology Spectrum, 2023, 11(6):e0206923.
15. Jiang Qiuyun, Jing Hongmei*, Li Xuegong, et al. Active pathways of anaerobic methane oxidization in deep-sea cold seeps of the South China Sea. Microbiology Spectrum, 2023, 11(6):e0250523.
16. Jiang Qiuyun, Jing Hongmei*, Liu Hao,et al. Biogeographic distributions of microbial communities associated with anaerobic methane oxidation in the surface sediments of deep-sea cold seeps in the South China Sea. Frontiers in Microbiology, 2022, 13:1060206.
17. Liu Hao, Wang Fangzhou, Liu Hongbin, Jing Hongmei*. Metabolic activity and community structure of prokaryotes associated with particles in the twilight zone of the South China Sea. Frontiers in Microbiology, 2022, 13:1056860.
18. Wang Fangzhou, Zhang Yue, Jing Hongmei*, et al. Spatial variation and metabolic diversity of microbial communities in the surface sediments of the Mariana Trench. Frontiers in Microbiology, 2022, 13:1051999.
19. Wang Ting, Xia Xiaomin, Chen Jiawei, Liu Hongbin, Jing Hongmei*. Spatio-temporal variation of Synechococcus assemblages at DNA and cDNA levels in the tropical estuarine and coastal Waters. Frontiers in Microbiology, 2022, 13:837037.
20. Jing Hongmei*, Xiao Xiang, Zhang Yue, et al. Composition and ecological roles of the core microbiome along the abyssal-hadal transition zone sediments of the Mariana Trench. Microbiology Spectrum, 2022, 10(3):e0198821.
21. Zhang Yue, Huang Ning, Jing Hongmei*. Biogeography and population divergence of microeukaryotes associated with fluids and chimneys in the hydrothermal vents of the Southwest Indian Ocean. Microbiology Spectrum, 2022, 10(5):e0263221.
22. Jamy Mahwash, Biwer Charlie, Vaulot Daniel, Obiol Aleix, Jing Hongmei, et al. Global patterns and rates of habitat transitions across the eukaryotic tree of life. Nature Ecology & Evolution, 2022, 6(10):1458-1470.
23. Jiang Qiuyun, Jing Hongmei*, Jiang Qiulong, et al. Insights into carbon-fixation pathways through metagonomics in the sediments of deep-sea cold seeps. Marine Pollution Bulletin, 2022, 176:113458.
24. Liu Hao, Zhou Peng, Cheung Shunyan, Lu Yanhong, Liu Hongbin, Jing Hongmei*. Distribution and oxidation rates of ammonia-oxidizing archaea influenced by the coastal upwelling off Eastern Hainan Island. Microorganisms, 2022, 10(5):952.
25. Du Mengran, Peng Xiaotong*, Zhang Haibin,Ye Cong, Dasgupta Shamik, Li Jiwei, Li Jiangtao, Liu Shuangquan, Xu Hengchao, Chen Chuanxu, Jing Hongmei, et al. Geology, environment and life of the deepest part of the world's ocean, Innovation, 2021, 2(2):100109.
26. Jian Huahua, Yi Yi, Wang Jiahua, Hao Yali, Zhang Mujie, Wang Siyuan, Meng Canxing, Zhang Yue, Jing Hongmei, et al. Diversity and distribution of viruses inhabiting the deepest ocean on Earth. The ISME Journal, 2021, 15(10): 3049-3110.
27. Xia Xiaomin, Zheng Qiang, Leung Sze Ki, Wang Yu, Lee Pui Yin, Jing Hongmei, et al. Distinct metabolic strategies of the dominant heterotrophic bacterial groups associated with marine Synechococcusa. Science of the Total Environment, 2021, 798: 149208.
28. Zhao Jiulong, Jing Hongmei*, Wang Zengmeng, et al. Novel viral communities potentially assisting in carbon, nitrogen, and sulfur metabolism in the upper slope sediments of Mariana Trench. mSystems, 2021, 7(1):e0135821.
29. Zhang Yue, Huang Ning, Wang Minxiao, Liu Hongbin, Jing Hongmei*. Microbial eukaryotes associated with sediments in deep-sea cold seeps. Frontiers in Microbiology, 2021, 12:782004.
碩士、博士研究生招生信息
碩士招生簡章：http://www.idsse.cas.cn/xwdt2015/tzgg2015/201609/t20160921_4666092.html
博士招生簡章：http://www.idsse.cas.cn/xwdt2015/tzgg2015/201609/t20160921_4666093.html
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